The complete chloroplast genome sequence of Euonymus japonicus (Celastraceae).
Identifieur interne : 001632 ( Main/Exploration ); précédent : 001631; suivant : 001633The complete chloroplast genome sequence of Euonymus japonicus (Celastraceae).
Auteurs : Kyoung Su Choi [Corée du Sud] ; Seonjoo Park [Corée du Sud]Source :
- Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis [ 2470-1408 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Plant, RNA, Transfer.
- genetics : Euonymus.
- Genes, Plant, Genes, rRNA, Genome, Chloroplast, Introns, Inverted Repeat Sequences, Phylogeny, Whole Genome Sequencing.
Abstract
The complete chloroplast (cp) genome sequence of the Euonymus japonicus, the first sequenced of the genus Euonymus, was reported in this study. The total length was 157 637 bp, containing a pair of 26 678 bp inverted repeat region (IR), which were separated by small single copy (SSC) region and large single copy (LSC) region of 18 340 bp and 85 941 bp, respectively. This genome contains 107 unique genes, including 74 coding genes, four rRNA genes, and 29 tRNA genes. Seventeen genes contain intron of E. japonicus, of which three genes (clpP, ycf3, and rps12) include two introns. The maximum likelihood (ML) phylogenetic analysis revealed that E. japonicus was closely related to Manihot and Populus.
DOI: 10.3109/19401736.2015.1075127
PubMed: 26407184
Affiliations:
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The total length was 157 637 bp, containing a pair of 26 678 bp inverted repeat region (IR), which were separated by small single copy (SSC) region and large single copy (LSC) region of 18 340 bp and 85 941 bp, respectively. This genome contains 107 unique genes, including 74 coding genes, four rRNA genes, and 29 tRNA genes. Seventeen genes contain intron of E. japonicus, of which three genes (clpP, ycf3, and rps12) include two introns. The maximum likelihood (ML) phylogenetic analysis revealed that E. japonicus was closely related to Manihot and Populus.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26407184</PMID><DateCompleted><Year>2018</Year><Month>02</Month><Day>02</Day></DateCompleted><DateRevised><Year>2018</Year><Month>05</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2470-1408</ISSN><JournalIssue CitedMedium="Internet"><Volume>27</Volume><Issue>5</Issue><PubDate><Year>2016</Year><Month>09</Month></PubDate></JournalIssue><Title>Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis</Title><ISOAbbreviation>Mitochondrial DNA A DNA Mapp Seq Anal</ISOAbbreviation></Journal><ArticleTitle>The complete chloroplast genome sequence of Euonymus japonicus (Celastraceae).</ArticleTitle><Pagination><MedlinePgn>3577-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3109/19401736.2015.1075127</ELocationID><Abstract><AbstractText>The complete chloroplast (cp) genome sequence of the Euonymus japonicus, the first sequenced of the genus Euonymus, was reported in this study. The total length was 157 637 bp, containing a pair of 26 678 bp inverted repeat region (IR), which were separated by small single copy (SSC) region and large single copy (LSC) region of 18 340 bp and 85 941 bp, respectively. This genome contains 107 unique genes, including 74 coding genes, four rRNA genes, and 29 tRNA genes. Seventeen genes contain intron of E. japonicus, of which three genes (clpP, ycf3, and rps12) include two introns. The maximum likelihood (ML) phylogenetic analysis revealed that E. japonicus was closely related to Manihot and Populus.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Kyoung Su</ForeName><Initials>KS</Initials><AffiliationInfo><Affiliation>a Department of Life Sciences , Yeungnam University , Gyeongsan, Gyeongsangbuk-do , Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>SeonJoo</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>a Department of Life Sciences , Yeungnam University , Gyeongsan, Gyeongsangbuk-do , Korea.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>08</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mitochondrial DNA A DNA Mapp Seq Anal</MedlineTA><NlmUniqueID>101679980</NlmUniqueID><ISSNLinking>2470-1394</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018749">RNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>9014-25-9</RegistryNumber><NameOfSubstance UI="D012343">RNA, Transfer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D029756" MajorTopicYN="N">Euonymus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054628" MajorTopicYN="Y">Genome, Chloroplast</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055029" MajorTopicYN="N">Inverted Repeat Sequences</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018749" MajorTopicYN="N">RNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012343" MajorTopicYN="N">RNA, Transfer</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000073336" MajorTopicYN="N">Whole Genome Sequencing</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Celastraceae</Keyword><Keyword MajorTopicYN="Y">Euonymus japonicus</Keyword><Keyword MajorTopicYN="Y">chloroplast genome</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>9</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>9</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>2</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26407184</ArticleId><ArticleId IdType="doi">10.3109/19401736.2015.1075127</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li></country></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Choi, Kyoung Su" sort="Choi, Kyoung Su" uniqKey="Choi K" first="Kyoung Su" last="Choi">Kyoung Su Choi</name></noRegion><name sortKey="Park, Seonjoo" sort="Park, Seonjoo" uniqKey="Park S" first="Seonjoo" last="Park">Seonjoo Park</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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